Dear sir,
You are just changing cost center or location right? after changing are you using ABAVN t-code for scrapping asset or not?
If you want to just change location or cost center try to change with the help of More intervals tab in time dependent data tab. more intervals help you maintain cost center from which date new cost center will be effected.
one more thing that the error of incomplete asset might be depericiation run will be effected on cost center maintained in time dependent data. please try to run repeat run after changing cost center to post reversal entries for old cost center if any.
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A.Krishnareddy